Logseq
7.5/10Save $60/yrBest research open-source AGPL with daily journals
AGPL-licensed outliner with full source on GitHub; daily journal pages baked into Open Source.
| Plan | Monthly | Annual | What you get |
|---|---|---|---|
| Open Source | Free | — | AGPL-licensed open-source outliner free forever with local Markdown plus Org-mode files, bidirectional links, and graph view |
| Sync | $5.00/mo | $60.00/yr | $5 per month annual ($8 monthly) for end-to-end encrypted sync across devices; the only paid tier |
Logseq is the open-source AGPL pick and the cleanest free-research path. Founded 2020 by Tienson Qin with a distributed team. AGPL-licensed with the full source on GitHub at around 33,000 stars. The wedge for researchers: Open Source ships daily journal pages and bidirectional links at no cost, and the AGPL license guarantees the application stays usable through a multi-year program even if the company changes hands.
Open Source covers AGPL self-host with local Markdown plus Org-mode files, bidirectional links, graph view, and no accounts required. Sync is the only paid tier at five dollars a month annual with end-to-end encrypted multi-device sync and 5GB storage. The realistic five-year cost is zero for self-host; sixty dollars a year for Sync if multi-device matters. The plugin ecosystem is smaller than Obsidian's, but the BibTeX plugin and daily-notes structure cover the literature-review baseline.
The trade-off versus Obsidian is plugin breadth (around 150 community plugins versus more than 1,500). The trade-off versus Roam is UX polish in early-2026 builds. For PhDs who want auditable AGPL source, files-on-disk portability, and the lowest five-year sustained cost in the lineup, Logseq leads.
Pros
- AGPL OSS with full source on GitHub at around 33k stars
- Open Source daily journal pages and bidirectional links at no cost
- Sync at five dollars a month annual with E2EE and 5GB storage
- Self-hostable; community-driven AGPL development with a long-term posture
- BibTeX plugin and Markdown plus Org-mode files cover literature-review baseline
Cons
- Plugin ecosystem smaller than Obsidian (around 150 versus more than 1,500)
- UX rougher than Notion or Obsidian on early-2026 builds
Best for: PhDs who want auditable AGPL source, files-on-disk portability, and the lowest five-year sustained cost across a multi-year program.
- Sync
- 10
- Linking
- 8
- Workflow
- 7
- Value
- 10
- Support
- 6